The Charity Commission in Mumbai takes a 2% fee on all donations to Mumbai groups. The fee is supposed to cover the cost of the Commission, but seeing as it isn’t staffed with qualified people, there isn’t a computer in their offices, and it generally does nothing, I think this is my new least favorite thing about Mumbai’s government. They have many millions (if not billons) of rupees collected that are just sitting there. They should, at the least, return some of this money.
Thankfully, the NGOs have gotten together and made serious efforts to get rid of this fee, and it should be gone soon. A good site for more information on this issue (and NGOs generally) is karmayog.com.